Episode 1
The search is one for an escaped drone as Eva Thorne arrives to assist the clean up of damages which Global Dynamics has caused.
Episode 2
Carter and Allison investigate when a scientist mysteriously disappears from a sealed biosphere. Meanwhile, the "Fixer" tries to make Eureka's efforts more profitable.
Episode 3
Eureka's annual dog show is underway and is like none other. Meanwhile, Sheriff Carter experiences an earthquake; Zoe debates quitting the accelerated physics program; and Allison starts the process of fitting her wedding dress.
Episode 4
It's Allison and Stark's wedding day and Carter finds himself reliving it over and over. Meanwhile, Carter's sister, Lexi, visits the town.
Episode 5
A search for a mummy ensues after a famed archaeologist opens the tomb of an Egyptian queen at Global Dynamics.
Episode 6
Carter's job is made more difficult when a super hero emerges. Meanwhile, Zoe and her friends are imperiled when Thorne makes a subterranean search beneath Eureka.
Episode 7
The Eureka mayoral race is overshadowed by the sudden arrival of a second sun, forcing Carter, Allison and Zane to investigate it more closely.
Episode 8
Trust issues are produced by a scientific find, along with sinister results. Zoe's life is in jeopardy, and Eva Thorne knows what has caused the predicament.
Episode 9
Carter interviews for a job with the Department of Homeland Security, after being terminated as the sheriff. Deputy Lupo decides to resign after discovering that a very personable robot is the new sheriff.
Episode 10
Jo displays atypical behavior after a DNA scan malfunctions, unfortunately it's while she's interim sheriff because Carter is undergoing a 48-hour DOD recertification test.
Episode 11
Dr. Tess Fontana reopens Section 5, causing objects to become ambulatory , possibly due to poltergeists.
Episode 12
Carter finds himself chasing down creation of blob-ical like proportions when a series of escalating pranks turn deadly. Elsewhere, long-term rivals from Area 51 come to Eureka for a bowling tournament.
Episode 13
Eureka's teenagers who appear to have been manipulated while asleep, gathered in a field where they assembled a strange structure comprised of scrap metal and electronics.
Episode 14
Henry's ship returns causing Carter to fear it maybe linked to the town's deadly electrical anomalies.
Episode 15
Allison's baby shower fetches her a load of eco-friendly gifts and the discovery of a drowned scientist in a location where drowning is impossible.
Episode 16
Global Dynamics sonic cleaning coincides with a phenomenon in which the citizens of Eureka develop a form of amnesia. Meanwhile, Allison goes into labor.
Episode 17
The first day on the job as temporary head of Global Dynamics proves daunting for Tess when a new Ice Age comes to Eureka; and a familiar face returns in the process.
Episode 18
Tess has a job offer from Australia, Zoe is prepared to leave for Harvard and Carter has a magnetic disturbance above Eureka to contend with, in the third season finale.